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RUJIN CHEN, Ph.D. Plant Biology Division, Samuel Roberts Noble Foundation;

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Curriculum Vitae RUJIN CHEN, Ph.D. Plant Biology Division, Samuel Roberts Noble Foundation; Background Lanzhou University, PR China Biology B.Sc Institute of Botany, Beijing,
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Curriculum Vitae RUJIN CHEN, Ph.D. Plant Biology Division, Samuel Roberts Noble Foundation; Background Lanzhou University, PR China Biology B.Sc Institute of Botany, Beijing, CAS Plant Physiology and Biochemistry M.Sc Michigan State University Biochemistry Ph.D University of Wisconsin-Madison Genetics (postdoctoral training) Appointments Associate Professor, Samuel Roberts Noble Foundation, Ardmore, Oklahoma 2010-present Assistant Professor, Samuel Roberts Noble Foundation, Ardmore, Oklahoma Adjunct Faculty, Dept. of Botany and Microbiology, Univ. of Oklahoma 2002-present Adjunct Faculty, Department of Botany, Oklahoma State University 2004-present Postdoctoral Associate, Laboratory of Genetics, UW-Madison Graduate Assistant, MSU-DOE Plant Research Laboratory, MSU Publications 1. Devvuru, muni, R., Dai, X., Chen, Y., Li, G., Zhao, P. and Chen, R. (2010) MTGOTA, a novel genome tiling array for detection of deletion in fast neutron mutants and genome structural variation in natural accessions of Medicago truncatula. (Manuscript in preparation). 2. Zhou, Z., Zhang, C., Wu, L., Zhang, C., Chai, J., Wang, M., Jha, A., Jia, P., Cui, S., Yang, M., Chen, R. and Guo, G. (2010) Functional characterization of the CKRC1/TAA1 gene and dissection of hormonal actions in the Arabidopsis root. Plant J. (accepted). 3. Murray, J., Duvvuru Muni, R., Torres-Jerez, I., Tang, Y., Allen, S., Andriankaja, M., Li, G., Laxmi, A., Cheng, X., Vaughan, D., Schultze, M., Sun, J., Charpentier, M., Oldroyd, G., Tadege, M., Ratet, R., Mysore, K. S., Chen, R. and Udvardi, M. (2010) Vapyrin, a gene essential for intracellular progression of arbuscular mycorrhizal symbiosis, is also essential for infection by rhizobia in the nodule symbiosis of Medicago truncatula. Plant J. DOI: /j X x 4. Ge, L., Chen, J., and Chen, R. (2010) Palmate-like pentafoliata1 encodes a novel Cys(2)His(2) zinc finger transcription factor essential for compound leaf morphogenesis in Medicago truncatula. Plant Signal Behavior 5: Chen, J., Yu, J., Ge, L., Wang, H., Berbel, A., Yu, L., Chen, Y., Li, G., Tadege, M., Wen, J., Cosson, V., Mysore, K. S., Ratet, P., Madueno, F., Bai, G. and Chen, R. (2010) Control of dissected leaf morphology by a Cys(2)His(2) zinc finger transcription factor in the model legume Medicago truncatula. Proc. Natl. Acad. Sci. U. S. A. 107: Wang, Y., Jha, A.K., Chen, R., Doonan, J. and Yang, M. (2010) Polyploidy-associated genomic instability in Arabidopsis thaliana. Genesis 48, 7. Roger, C., Wen, J., Chen, R. and Oldroyd, G. (2009) Deletion based reverse genetics in Medicago truncatula. Plant Physiol. 151, Pan, J., Fujioka, S., Peng, L., Chen, J., Li, G. and Chen, R. (2009) The E3 ubiquitin ligase SCF TIR1/AFB and membrane sterols play key roles in auxin regulation of endocytosis, recycling and PM accumulation of auxin efflux transporter PIN2 in Arabidopsis thaliana. Plant Cell 21, Wang, H., Chen, J., Wen, J., Tadege, M., Li, G., Liu, Y., Mysore, K.S., Ratet, P. and Chen, R. (2008) Control of compound leaf development by FLO/LFY ortholog Single Leaflet1 (SGL1) in model legume Medicago truncatula. Plant Physiol. 146, Laxmi, A., Pan, J., Morsy, M. and Chen, R. (2008) Light plays an essential role in intracellular distribution of auxin efflux carrier PIN2 in Arabidopsis thaliana. PLoS ONE 3, e1510. doi: Zhou, X., Wang, Y.Z., Smith, J.S., Chen, R. (2008). Altered expression patterns of TCP and MYB genes relating to the floral developmental transition from initial zygomorphy to actinomorphy in Bournea (Gesneriaceae). New Phytologist 178, Wang, H., Li, G. and Chen, R. (2006) Fast neutron bombardment (FNB) mutagenesis for forward and reverse genetic studies in plants. In: Floriculture, Ornamental and Plant Biotechnology: advances and topical issues (1st Edition), Ed. Jaime A. Teixeira da Silva, (Global Science Books; London, UK), Vol. 1, pp Shin, H., Shin, H.S., Chen, R. and Harrison, M.J. (2006) Loss of At4 function impacts phosphate distribution between the roots and the shoots during phosphate starvation. Plant J. 45, Chen, R. and Masson, P.H. (2006) Auxin transport and recycling of PIN proteins in plants. In: The Plant Endocytosis. Eds. Šamaj, J., Baluška, F. and Menzel, D. (Springer-Verlag), p Baluška, F., Barlow, P.W., Baskin, T., Chen, R., Feldman, L., Forde, B., Geisler, M., Jernstedt, J., Menzel, D., Muday, G., Murphy, A., Šamaj, J.,Taiz, L. and Volkmann, D. (2005) What is apical and what is basal in plant root development? Trends Plant Sci. 10, Shin, H., Shin, H.S., Guo, Z., Blancaflor, E.B., Masson, P.H. and Chen, R. (2005) Complex regulation of Arabidopsis AGR1/PIN2-mediated root gravitropic response and basipetal auxin transport by cantharidin-sensitive protein phosphatases. Plant J. 42, Peer, W.A., Bandyopadhyay, A., Blakeslee, J.J., Makam, S.N., Chen, R., Masson, P.H. and Murphy, A.S. (2004) Variation in expression and protein localization of the PIN family of auxin efflux facilitator proteins in flavonoid mutants with altered auxin transport in Arabidopsis thaliana. Plant Cell 16, Hou, G., Kramer, V.L., Wang, Y-S., Chen, R., Perbal, G., Gilroy, S. and Blancaflor, E.B. (2004) The promotion of gravitropism in Arabidopsis roots upon actin disruption is coupled with the extended alkalinization of the columella cytoplasm and a persistent lateral auxin gradient. Plant J. 39, Boonsirichai, K., Sedbrook, J., Chen, R., Gilroy, S. and Masson, P.H. (2003) ALTERED RESPONSE TO GRAVITY is a peripheral membrane protein that modulates gravity-induced cytoplasmic alkalinization and lateral auxin transport in plant statocytes. Plant Cell 15, Chen, R., Guan, C., Boonsirichai, K., and Masson, P.H. (2002) Complex physiological and molecular processes underlying root gravitropism. Plant Mol. Biol. 49, 21. Boonsirichai, K., Guan, C., Chen, R., and Masson, P.H. (2002) Root Gravitropism: An Experimental tool to investigate basic cellular and molecular processes underlying mechanosensing and signal transmission in plants. Annu. Rev. Plant Biol. 53, Masson, P.H., Tasaka, M., Morita, M.T., Guan, C., Chen, R. and Boonsirichai, K. (2002) Arabidopsis thaliana: A model for the study of root and shoot gravitropism. The Arabidopsis Book. 23. Chen, R., Rosen, E. and Masson, P.H. (1999) Gravitropism in higher plants. Plant Physiol. 120, Sedbrook, J., Chen, R. and Masson, P.H. (1999) ARG1 (altered response to gravity) encodes a novel DnaJ-like protein which potentially interacts with the cytoskeleton. Proc. Natl. Acad. Sci. U. S. A. 96, Rosen, E., Chen, R., Masson, P.H. (1999) Root gravitropism: a complex response to a simple stimulus? Trends Plant Sci. 4, Chen, R., Hilson, P., Sedbrook, J., Rosen, E., Caspar, T. and Masson, P.H. (1998) The Arabidopsis thaliana AGRAVITROPIC 1 (AGR1) gene encodes a component of the polar-auxin-transport efflux carrier. Proc. Natl. Acad. Sci. U. S. A. 95, Sedbrook, J., Boonsirichai, K., Chen, R., Hilson, P., Pearlman, R., Rosen, E., Rutherford, R., Batiza, A., Carroll, K., Schulz, T., Masson, P.H. (1998) Molecular genetics of root gravitropism and waving in Arabidopsis thaliana. Gravit. Space Biol. Bull. 11, Chen, R., Silver, D. and de Bruijn, F.J. (1998) Nodule parenchyma specific expression of the Sesbania rostrata early nodulin SrEnod2 gene is mediated by cis-acting sequences located in its 3 UTR region. Plant Cell 10, Silver, D., Pinaev, A., Chen, R., and de Bruijn, F.J. (1996) Post-transcriptional regulation of the Sesbania rostrata early nodulin SrEnod2 gene by cytokinin. Plant Physiol. 112, Chen, R. (1996) Structure, function and regulation of the early nodulin gene Enod2 from legume plants. Dissertation for the degree of Ph.D., Michigan State University. 31. Chen, R., and de Bruijn, F.J. (1995) Regulation and function of the Sesbania rostrata early noduling gene Enod2. In: Nitrogen Fixation: Fundamentals and Applications. Eds.: I.A. Tikhonovich, V.J. Romanov, N.A. Provorov, and W.E. Newton. Kluwer Academic Publishers, Dortrecht. pp de Bruijn, F.J. Chen, R., Fujimoto, S.F., Pinaev, A., Silver, D., and Szczglowski, K. (1994) Regulation of nodulin gene expression. Plant and Soil 161, de Bruijn, F.J., Chen, R., Dehio, D., Goel, A., Reiser, S., and Szczglowski, K. (1992) Hormones and nodule formation: cytokinin induction of the Sesbania rostrata early nodulin gene Enod2. In: Nodulation and Nitrogen Fixation in Rice: Potential and Prospects. Eds.: Kush, G., and Bennett, J. p Wu, N., Chen, R., Kuang, T. and Tang, P.-S. (1989) Isolation and mapping of psaa gene coding for the reaction center chlorophyll a apoprotein of photosystem I from rice (Oryza sativa) chloroplast genome. Chinese J. Bot. (English). 1(1), Kang, W., Sun, B. and Chen, R. (1986) A microscopic study of flower development of Lanzhou melon-5 melon. Act. Bot. Bor.-occ. Sinica 6(3), Patent application 1. Chen, R., Chen, J., Ge, L., Mysore, K., Uppalapati, S. and Ishiga, Y. (2010) ALTERED LEAF MORPHOLOGY AND ENHANCED AGRONOMIC PROPERTIES IN PLANTS. PROVISIONAL APPLICATION FOR UNITED STATES LETTERS PATENT (NBLE: 073USP1) Synergistic Activities 1. Graduate thesis committee Dept. of Botany and Microbiology, University of Oklahoma, Norman Dept. of Botany, Oklahoma State University, Stillwater 2. Reviewer of grant proposals United States Dept. of Agriculture (USDA-CSREES) United States National Science Foundation Council for the Earth and Life sciences, NWO, The Netherlands The Research Foundation Flanders FWO, Belgium The Israel Science Foundation - Israel French National Research Agency - France 3. Panelist USDA-CSREES Plant Genome Program, Reviewer of manuscripts Plant Cell; Development; Plant Physiology; The Plant Journal; Nature Chemical Biology; Journal of Biological Chemistry; Tree Genetics and Genomics; Journal of Plant Physiology; Biochimie; Gene; Plant Science; Functional Plant Biology; PLoS One 5. Organizer International Medicago truncatula community mutant screens ( present) Editorial Board Associate Editor, Plant Signaling & Behavior (2005 present) Past and current supports 1. Project title: Development of genetic resources to dissect the regulatory networks governing nodule development and differentiation in Medicago truncatula Source of support: National Science Foundation (DBI ) Investigators: Michael Udvardi, Rujin Chen and Kirankumar Mysore Total award amount: $3,831,732 (Chen s portion, $1,277,244) Total award period: 10/16/07 09/31/11 Effort: 20% 2. Project title: MRI: Acquisition of a spinning disk confocal microscope for rapid imaging of plant cellular processes Source of support: National Science Foundation (DBI ) Investigators: Elison Blancaflor, Rujin Chen, Kirankumar Mysore, Richard S. Nelson and Aline Valster (Senior Personnel: Richard A. Dixon, Kelly D. Craven and Michael K. Udvardi) Total award amount: $369,001 Total award period: 08/01/07 07/31/10 3. Project title: MRI: A single photon laser confocal scanning microscope for multi-spectral imaging of plant cellular processes Source of support: National Science Foundation (DBI ) Investigators: Elison Blancaflor, Richard A. Dixon, Gregory D. May, Richard S. Nelson and Marilyn J. Roossinck (Senior Personnel: Rujin Chen, Kirankumar Mysore, Zeng-yu Wang and Maria Harrison) Total award amount: $485,210 Total award period: 08/01/04 07/31/07 Invited Talks and Proceedings 1. Chen, R. (2010) Compound leaf development in legume. Nov. 12. Lanzhou University, Gansu, P.R. China (invited talk) 2. Chen, R. (2010) Compound leaf morphogenesis in Medicago truncatula. Nov. 18. Institute of Botany, Chinese Academy of Sciences, Beijing, P.R. China (Invited talk) 3. Chen, R. (2010) Development of genetic resources to dissect the regulatory networks governing nodule development and differentiation in Medicago truncatula. NSF Plant Genome Program Awardee Meeting. Sept. 8-10, Arlington, VA (invited talk) 4. Chen, J., Yu, J., Ge, L., Wang, H., Berbel, A., Yu, L., Chen, Y., Li, G., Tadege, M., Wen, J., Cosson, V., Mysore, K. S., Ratet, P., Madueno, F., Bai, G. and Chen, R. (2010) Control of dissected leaf morphology by a Cys(2)His(2) zinc finger transcription factor in the model legume Medicago truncatula. July 2-8, International Congress on Legume Genetics and Genomics, Asilomar, California (invited talk) 5. Duvvuru muni, R., Dai, X., Chen, Y., Li, G., Zhao, P. and Chen, R. (2010) Mt-GOTA: A Genome Tiling Array For Copy Number Variation Detection In Fast Neutron Induced Deletion Mutants And Natural Accessions of Medicago truncatula. Plant and Animal Genome XVIII Conference, January 15-19, Town & Country Convention Center; San Diego, California 6. Chen, R. (2009) Molecular mechanisms of compound leaf development in legume. Dec. 25, Zhejiang Normal University, China (invited talk) 7. Peng, J., Wang, H., Yu, J., Chen, J., Wang, Y., Li, G., Bai, G. and Chen, R. (2009) Toward Molecular Cloning of Fusion Compound Leaf1, a regulator of boundary formation during compound leaf development in Medicago truncatula. Model Legume Congress, July 12-16, Asilomar, California, USA 8. Duvvuru muni, R., Dai, X., Chen, Y., Li, G., Zhao, P. and Chen, R. (2009) Development of a novel Medicago truncatula genome tiling array: Implications for detecting deletion mutations and genome alterations. Model Legume Congress, July 12-16, Asilomar, California, USA (invited talk) 9. Chen, R., Chen, J., Peng, J., Ge, L. and Li, G. (2009) Compound leaf development in the model legume Medicago truncatula. Model Legume Congress, July 12-16, Asilomar, California, USA (invited talk) 10. Chen, R. (2009) Simple vs. compound leaf development in Medicago truncatula. Department of Botany and Microbiology, University of Oklahoma, April 9, Norman, Oklahoma (invited talk) 11. Udvardi, M., Benedito, V. A.; Murray, J. D.; Pislariu, C.; Wang, M.; Tadege, M.; Duvvuru Muni, R. R.; A., A.; Z., J.; Torres-Jerez, I.; Taylor, M.; Zhang, S.; Cheng, X.; Wen, J.; He, J.; Dai, X.; Zhao, P. X.; Tang, Y.; Ratet, P.; Oldroyd, G.; Chen, R.; Mysore, K. (2008) Functional genomics of nitrogen fixation in Medicago. IV International legume genetics and genomics conference, December 7-12, Puerto Vallarta, Mexico 12. Chen, R. (2007) Compound leaf development in Medicago truncatula. Model Legume Congress (MLC2007), March, Tunis, Tunisia (invited talk) 13. Chen, R. (2007) Compound leaf development in Medicago truncatula. Institute of Botany, Chinese Academy of Sciences, July, Beijing, China (invited talk) 14. Chen, R. (2007) Development of genetic resources for compound leaf development studies in Medicago truncatula. University of North Texas, Sept., Denton, TX (invited talk) 15. Pan, J., Zhang, K., Li, G. and Chen, R. (2007) Auxin regulates polar axuin transport by regulating the auxin efflux facilitator PINs localization and activity. ASPB, Chicago, Illinois 16. Chen, R. (2006) Compound leaf development in legume. Department of Botany, Oklahoma State University, Stillwater, Oklahoma (invited talk) 17. Chen, R. (2006) Compound leaf development in legume. Danforth Center of Plant Science, St. Louis, Missouri (invited talk) 18. Chen, R. (2006) Light regulation of intracellular localization of auxin efflux carrier proteins. 2 nd International Conference of Plant Neurobiology, July, Beijing, China (invited talk) 19. Chen, R. (2006) Compound leaf development in legume. Institute of Botany, Chinese Academia of Sciences, July, Beijing, China (invited talk) 20. Chen, R. (2005) The role of polar auxin transport in plant development. Salk Institute for Biological Studies, San Diego, California (invited talk) 21. Wang, H., Yu, J. B., Li, G. M., Bai, G. H. and Chen, R. (2005) Deciphering molecular and genetic mechanisms of compound leaf morphogenesis in the model legume Medicago truncatula. Meristems 2005, June, Ames, Iowa 22. Chen, R. (2004) Auxin transport regulation of plant development. CNAP-University of York, United Kingdom (invited talk) 23. Chen, R., Shin, H., Shin, H.S., Guo, Z., Blancaflor, E., and Masson, P. H. (2004) Regulation of the root gravitropic response and basipetal auxin transport by the auxin efflux component Arabidopsis AGRAVITROPIC 1. American Society of Plant Biologists, July, Orlando, Florida (invited talk) 24. Wang, H., Li, G., Versaw, W., Shin, H., Dixon, R. A. and Chen, R. (2004) Development of reverse and forward genetic resources for the model legume Medicago truncatula. American Society of Plant Biologists, July, Orlando, Florida 25. Chen, R. (2003) Reverse and forward genetic systems for Medicago truncatula. Molecular Plant Biology Minisymposium, Oklahoma State University, Stillwater, Oklahoma (invited talk) 26. Chen, R. (2002) Polar auxin transport and plant development. Department of Botany and Microbiology, University of Oklahoma, Aug., Norman, Oklahoma (invited talk) 27. Chen, R. (1998) The Arabidopsis thaliana AGRAVITROPIC 1 (AGR1) gene encodes a component of the polar-auxin-transport efflux carrier. American Society of Plant Biologists (invited talk) 28. Sedbrook, J., Chen, R., Rosen, E., Hilson, P., Carroll, K., Masson, P.H. (1998) The AGR1 and ARG1 loci of Arabidopsis thaliana are involved in gravitropism. American Society of Plant Biologists 29. Sedbrook, J., Hilson, P., Chen, R., Caspar, T., Masson, P.H. (1997) Molecular cloning and characterization of the AGR1 and ARG1 loci involved in gravitropism in Arabidopsis thaliana. American Society of Plant Biologists
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